HDF5

Introduction

HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data. HDF5 is portable and is extensible, allowing applications to evolve in their use of HDF5. The HDF5 Technology suite includes tools and applications for managing, manipulating, viewing, and analyzing data in the HDF5 format.

Web page

Official web site

Versions

1.8.17

Flavours

default

Architecture

x86_64

Group
module load cv-standard
Build Details

Installed by Cluster Vision.

Usage
module load hdf5/1.8.17
Example Job Scripts

None required.

Status

Tested.

gcc49

Architecture

x86_64

Group
module load cv-standard

Parallel version for the GCC compilers and the MVAPICH2 MPI tools.

This version uses an outdated MLNX_OFED and shoult not be used.

Build Details

Installed by Cluster Vision.

Usage
module load gcc/4.9.3 mvapich2/mrail/gcc49/2.2rc2 hdf5/1.8.17/mvapich2/gcc49
Example Job Scripts

None required.

Status

Tested.

icc16

Architecture

x86_64

Group
module load cv-standard

Parallel version for use with the Intel 2016 compilers and the MVAPICH2 MPI tools.

This version uses an outdated MLNX_OFED and should not be used.

Build Details

Installed by Cluster Vision.

Usage
module load intel/compiler/64/2016.3.210 mvapich2/mrail/icc16/2.2rc2 hdf5/1.8.17/mvapich2/icc16
Example Job Scripts

None required.

Status

Tested.

mvapich2

Architecture

x86_64

Group
module load cv-standard

This uses an out-of-date MLNX_OFED and should not be used. The module will be withdrawn.

Generic parallel version using MVAPICH2.

Build Details

Installed by Cluster Vision.

Usage
module load gcc/6.3.0/1 mvapich2/mrail/gcc49/2.2rc2 hdf5/1.8.17/mvapich2
Example Job Scripts

None required.

Status

Tested.

mvapich2/gcc49

Architecture

x86_64

Group
module load cv-standard

This uses an out-of-date MLNX_OFED and should not be used. The module will be withdrawn.

Parallel version for the GCC compilers and the MVAPICH2 MPI tools.

Build Details

Installed by Cluster Vision.

Usage
module load gcc/4.9.3 mvapich2/mrail/gcc49/2.2rc2 hdf5/1.8.17/mvapich2/gcc49
Example Job Scripts

None required.

Status

Tested.

mvapich2/icc16

Architecture

x86_64

Group
module load cv-standard

This uses an out-of-date MLNX_OFED and should not be used. The module will be withdrawn.

Parallel version for use with the Intel 2016 compilers and the MVAPICH2 MPI tools.

Build Details

Installed by Cluster Vision.

Usage
module load intel/compiler/64/2016.3.210 mvapich2/mrail/icc16/2.2rc2 hdf5/1.8.17/mvapich2/icc16
Example Job Scripts

None required.

Status

Tested.

openmpi

Architecture

x86_64

Group
module load cv-standard

This uses an out-of-date MLNX_OFED and should not be used. The module will be withdrawn.

Generic parallel version for use with OpenMPI.

Build Details

Installed by Cluster Vision.

Usage
module load gcc/4.9.3 openmpi/ofed/gcc49/2.0.1 hdf5/1.8.17/openmpi
Example Job Scripts

None required.

Status

Tested.

openmpi/gcc49

Architecture

x86_64

Group
module load cv-standard

This uses an out-of-date MLNX_OFED and should not be used. The module will be withdrawn.

Parallel version for use with OpenMPI and the GCC compilers.

Build Details

Installed by Cluster Vision.

Usage
module load gcc/4.9.3 mvapich2/mrail/gcc49/2.2rc2 hdf5/1.8.17/openmpi/gcc49
Example Job Scripts

None required.

Status

Tested.

openmpi/icc16

Architecture

x86_64

Group
module load cv-standard

This uses an out-of-date MLNX_OFED and should not be used. The module will be withdrawn.

Parallel version for use with OpenMPI and the 2016 Intel compilers.

Build Details

Installed by Cluster Vision.

Usage
module load intel/compiler/64/2016.3.210 openmpi/ofed/icc16/2.0.1 hdf5/1.8.17/openmpi/icc16
Example Job Scripts

None required.

Status

Tested.